Phyisiology, Signal, and Noise | Principles of fMRI 1 | Coursera

Hi everyone,

This week, I continued the “Principles of fMRI 1” course, on The lecture discussed “Phyisiology, Signal, and Noise”.

On this lecture, Martin Lindquist and Tor Wager tackled “Signal, noise, and BOLD physiology”, “fMRI Artifacts & Noise”, “Spatial and Temporal Resolution of BOLD fMRI”, “Experimental Design – Kinds of Designs” and “Pre-processing”.

It started with some definitions and differences between MRI, fMRI and BOLD fMRI, and how BOLD fMRI allows us to measure the metabolic demands of active neurons. It also pointed out that not all BOLD signals reflect neuronal activity, and that BOLD fMRI require some acquisition, analysis and pre-processing techniques to be valid for a specific context.

One of the biggest problems in acquiring, analysing and pre-processing data is spatial and temporal resolutions, which need to be taken into consideration prior to the experiments, so it can be included in their design in order to validate the outcomes.

Another common issues is group experiments, which require more complex alignment and normalisation techniques that allows us to compare and match the outcomes with the expected results.

Finally, they discussed the kinds of designs that we can create and how data is handled by the General(ized) Linear Model, the trade-offs between each design, the characteristics variables, and how all comes down together with pre-processing techniques that correct for noise and errors (i.e., design errors, experiment errors, result deviations).

Without a doubt, it was a somewhat difficult lecture to understand, mostly, because the examples are too abstract for me to understand the underlying processes that undergo these three phases (i.e., acquisition, analysis, pre-processing). However, it was enlightening and clear enough for me to understand better how fMRI is modelled to each experiment and how to design for general or specific results.




The Brain and Space & Principles of fMRI | Coursera

Hi everyone,

The time has come for me to start the courses of “The Brain and Space” by Jennifer Groh of Duke University and Neural Basis of Perception Laboratory, and the “Principles of fMRI 1” by Martin Lindquist from Johns Hopkins University and Tor Wager from University of Colorado at Boulder.

While the courses are not severely related, they are both interesting for me, who is trying to learn as much as I can about the brain. I will try to comment without revealing too much of them. Go watch them if you want to know more.

The Brain and Space course discusses about how the brain creates our sense of spatial location from a variety of sensory and motor sources, and how this spatial sense in turn shapes our cognitive abilities. On the first lecture I learned about the eye and Vision as an introduction to visual representation of space.

The “Principles of fMRI 1” covers the design, acquisition, and analysis of Functional Magnetic Resonance Imaging (fMRI) data.On the first lecture, I was introduced to fMRI, and data acquisition and reconstruction of MR images.

There are several parallel courses I’m taking at the moment, including the “Synapses, Neurons and Brains”, “Computational Neuroscience” and, if all goes well, “Visual Perception and the Brain”. It feels a bit too much but considering my availability, I think I might be able to work them well and publish something here.